Package: iSubGen 1.0.1

iSubGen: Integrative Subtype Generation

Multi-data type subtyping, which is data type agnostic and accepts missing data. Subtyping is performed using intermediary assessments created with autoencoders and similarity calculations.

Authors:Natalie Fox

iSubGen_1.0.1.tar.gz
iSubGen_1.0.1.zip(r-4.5)iSubGen_1.0.1.zip(r-4.4)iSubGen_1.0.1.zip(r-4.3)
iSubGen_1.0.1.tgz(r-4.4-any)iSubGen_1.0.1.tgz(r-4.3-any)
iSubGen_1.0.1.tar.gz(r-4.5-noble)iSubGen_1.0.1.tar.gz(r-4.4-noble)
iSubGen_1.0.1.tgz(r-4.4-emscripten)iSubGen_1.0.1.tgz(r-4.3-emscripten)
iSubGen.pdf |iSubGen.html✨
iSubGen/json (API)

# Install 'iSubGen' in R:
install.packages('iSubGen', repos = c('https://pboutros.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 4 scripts 157 downloads 11 exports 41 dependencies

Last updated 4 years agofrom:c785984cb5. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-winOKNov 12 2024
R-4.5-linuxOKNov 12 2024
R-4.4-winOKNov 12 2024
R-4.4-macOKNov 12 2024
R-4.3-winOKOct 13 2024
R-4.3-macOKOct 13 2024

Exports:apply.scalingcalculate.cis.matrixcalculate.integrative.similarity.matrixcalculate.scalingcluster.patientscombine.integrative.featurescreate.autoencodercreate.autoencoder.irf.matrixload.molecular.aberration.dataread.scaling.factorswrite.scaling.factors

Dependencies:ALLbackportsbase64encBiobaseBiocGenericscliclusterconfigConsensusClusterPlusgenericsglueherejsonlitekerasKernSmoothlatticelifecyclemagrittrMatrixphilentropypngpoormanprocessxpsR6rappdirsRcppRcppTOMLreticulaterlangrprojrootrstudioapitensorflowtfautographtfrunstidyselectvctrswhiskerwithryamlzeallot

Guide for using iSubGen

Rendered fromiSubGenGuide.Rnwusingknitr::knitr_notangleon Nov 12 2024.

Last update: 2021-04-22
Started: 2021-04-15